atlagenePlatform
One path from file to report.
The lab portal holds the whole run: upload, checks, analysis, flagged findings and the report your team releases.
What happens to a file.
Every stage keeps the limits of the file in view.
- Upload receivedStored through a signed link that expires within minutes
- Format checkedThe file’s format is recognised before anything is analysed
- Analysis21 categories, with coverage calculated for each
- Report readyA PDF in your laboratory’s name, for your team’s review
Upload and checks
Lab staff upload the export through the lab portal: an array text export (.txt, .csv, .tsv) or a VCF, compressed or not. The format is recognised and checked before analysis begins.
Coverage per category
For each category, the share of its panel the file actually typed is calculated and shown next to the result.
Analysis
One variant registry drives all 21 categories. Genes read from more than one variant, such as APOE and HFE, have dedicated handling. Array calls are unphased, so a genotype built from two variants cannot show which copy carries each.
Safety flags
Each finding carries its own safety flag, set per variant rather than per category. A flagged finding always gets the full write-up, whatever the report settings.
Branded report
The report is generated as a PDF in English, in your laboratory’s name and branding, for your team to review and release.
21 categories.
Clinical areas come first. Wellness and trait areas are analysed too, and trait markers can be left out of a laboratory’s reports.
Clinical
- Pharmacogenomics
- Rare disease
- Oncology
- Cardiovascular
- Reproductive
- Neurological
- Metabolic
- Immunity
- Renal
- Hormonal
- Gastrointestinal
- Musculoskeletal
- Vision and hearing
- Dermatology
- Allergies
Wellness and traits
- Nutrition
- Sleep
- Athletics
- Longevity
- Dental
- Traits and heritage markers
Built on public evidence.
Variant definitions draw on ClinVar, the GWAS Catalog and PharmGKB. A definition becomes active only after it has been drafted and countersigned by a reviewer, and changes are kept in its history.
How we treat evidenceBring us your assay.
Tell us what you run, who reads the report and what you want an evaluation to answer. We reply with a scoped plan.